loadScript j2s/core/package.js

loadScript j2s/core/corejmol.z.js

loadScript j2s/J/translation/PO.js

loadScript j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__989660332581832__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__989660332581832__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://katakago.sakura.ne.jp/soft/jsmol/simple.htm","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__989660332581832__","codePath":"https://katakago.sakura.ne.jp/soft/jsmol/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"989660332581832","bgcolor":"white" }

setting document base to "https://katakago.sakura.ne.jp/soft/jsmol/simple.htm"

Jmol Version: 14.29.50 2019-08-01 14:38

java.vendor: Java2Script (HTML5)

java.version: 2019-06-08 00:17:46 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager callback set for APPLETREADYCallback f=Jmol._readyCallback cb=APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__989660332581832__ ready

script 1 started

StatusManager callback set for animframecallback f=jmolscript:if (!selectionHalos) {select model=_modelNumber} cb=ANIMFRAME

animframecallback = "jmolscript:if (!selectionHalos) {select model=_modelNumber}"

StatusManager callback set for errorCallback f=myCallback cb=ERROR

errorCallback = "myCallback"

defaultLoadScript = "isDssp = false;set defaultVDW babel;if(!h2oOn){display !water}"

zoomLarge = false

loadScript j2s/core/coretext.z.js

loading 1crn...

FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/1crn.pdb)

FileManager opening url https://files.rcsb.org/download/1crn.pdb

The Resolver thinks Pdb

loadScript j2s/core/corebio.z.js

PLANT PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC RESOLUTION.

PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS OF CRAMBIN

found biomolecule 1: A

biomolecule 1: number of transforms: 1

Setting space group name to P 1 21 1

1CRN

Time for openFile(https://files.rcsb.org/download/1crn.pdb): 2959 ms

reading 327 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

327 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 57 ms

PLANT PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC RESOLUTION.

PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS OF CRAMBIN

found biomolecule 1: A

1CRN

Using defaultLoadScript: isDssp = false;set defaultVDW babel;if(!h2oOn){display !water}